BOOK
REVIEW J. Felsenstein, Inferring
Phylogenies, Sinauer Assoc ...
J. Felsenstein, Inferring Phylogenies, Sinauer Assoc., 2004, pp. xx. + 664. This is an important and very useful book that should be of interest to ...
http://www.springerlink.com/index/NW625852128865G7.pdf
- Molecular
identification of the mycorrhizal fungi of the ...
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791. Felsenstein J (2004) PHYLIP: Phylogeny ...
http://www.springerlink.com/index/MNR9TJD7TV9MQ4TC.pdf
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btl136 1399..1401
Dettman,J.R. and Taylor,J.W. (2004) Mutation and evolution of microsatellite loci in. Neurospora. Genetics, 168, 1231–1248. Felsenstein,J. (2004) PHYLIP ...
http://bioinformatics.oxfordjournals.org/cgi/reprint/22/11/1399.pdf
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SNAP: Combine and Map modules for multilocus population genetic
...
6 Apr 2006 ... Felsenstein, J. (2004) PHYLIP (Phylogeny Inference Package). Distributed by the author,. Department of Genomic Sciences, University of ...
http://bioinformatics.oxfordjournals.org/cgi/reprint/btl136v1.pdf
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The K tree score: quantification of differences in the relative
...
by V Soria-Carrasco - 2007 - Cited by 8
http://molevol.cmima.csic.es/castresana/pdf/Soria-Carrasco_2007.pdf
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Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene
...
by JH Badger - 2005 - Cited by 17
http://homepage.mac.com/jonathan_eisen/PDFs/82.Badger2005-hyphophylo.pdf
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BIOINFORMATICS APPLICATIONS NOTE Vol. 21 no. 3 2005, pages
402–404
Felsenstein,J. (2004) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genomic. Sciences, University of Washington ...
http://www.cals.ncsu.edu/plantpath/people/faculty/carbone/Price&Carbone_2005.pdf
- CoMET: A
Mesquite package for comparing models of continuous ...
by C Lee - 2006 - Cited by 9
http://www.cs.ucsb.edu/~dbl/papers/lee_ebo_2006.pdf
- "Molecular
Phylogeny Reconstruction". In: Encyclopedia of Life ...
by S Kumar - Cited by 2
http://www.kumarlab.net/pdf_new/FilipskiKumar08.pdf
- A
multi-neighbor-joining approach for phylogenetic tree ...
- Related articles
http://www.funpecrp.com.br/gmr/year2005/vol3-4//pdf/wob03.pdf
-
Bayesian inference of character evolution
by F Ronquist - 2004 - Cited by 110
http://hymenoptera.tamu.edu/courses/ento606/Suggested Readings/Ronquist_2004.pdf
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BOOK REVIEW
Felsenstein J (1993). PHYLIP. Phylogenetic Inference Package. Version 3.5c. Department of Genetics, University of. Washington. Felsenstein J (2004). ...
http://serine.umiacs.umd.edu/publications/files/cummings_2004.pdf
- A call for
likelihood phylogenetics even when the process of ...
by EA Gaucher - 2005 - Cited by 24
http://www.ffame.org/pubs/mpe37.928-931.pdf
-
Taking the First Steps towards a Standard for Reporting on ...
by J Leebens-Mack - 2006 - Cited by 20
http://deepblue.lib.umich.edu/bitstream/2027.42/63208/1/omi.2006.10.231.pdf
- TREEFIT
Felsenstein, 2004, for a description of these methods). Let Dij represent the observed genetic distance between populations i and j. ...
http://www.montana.edu/kalinowski/TreeFit/TreeFit Manual.pdf
-
Inferring phylogenies: an epic worth the wait
by M Steel - 2004 - Related articles
http://www.math.canterbury.ac.nz/~m.steel/Non_UC/files/research/inferring.pdf
- Molecular
phylogeny of Chromodoris (Mollusca, Nudibranchia) and ...
by NG Wilson - 2005 - Cited by 4
http://www.scsagr.com/upimg/20085301310.pdf
-
msn256 245..248
Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 17:368–376. Felsenstein J. 2004. ...
http://www.tempoandmode.com/wp-content/uploads/2009/01/mbe09_rambaut.pdf
-
The Contest Between Parsimony and Likelihood
by E Sober - 2004 - Cited by 26
http://philosophy.wisc.edu/sober/contest betw l and p syst biol 9 2004.pdf
- Phylogenetic
analyses can elucidate the history of diversifica-
by DE Wildman - 2007 - Cited by 44
http://hal.archives-ouvertes.fr/docs/00/19/31/71/PDF/pnas07.pdf
-
2004 1003 this is probably true of any book on
crustacean groups ...
Felsenstein, J. 2004. Inferring phylogenies. Sinauer, Sunderland,. Massachusetts. Yun S. Song and Jotun Hein, Department of Statistics, University of Oxford ...
http://www.eecs.berkeley.edu/~yss/Pub/Syst.Biol-53-1003.pdf
- Package
'phangorn'
Felsenstein, J. (2004). Inferring Phylogenies. Sinauer Associates, Sunderland. See Also pml, parsimony, ace, root. Examples example(NJ) ...
http://cran.r-project.org/web/packages/phangorn/phangorn.pdf
-
An open source phylogenetic search and alignment package Hyrum
...
7 Felsenstein, J. (2004). Inferring Phylogenies. Sinauer Associates, Sunderland, MA. 8 Felsenstein, J. (2007). PHYLIP (Phylogeny Inference Package) version ...
http://www.ncbi.nlm.nih.gov/CBBresearch/Fellows/Carroll/pubs/ijbra-psoda.pdf
- This
article appeared in a journal published by Elsevier. The ...
Sci. USA 101, 16819–16824. Felsenstein, J., 1985. Phylogenies and the comparative method. Am. Nat. 125, 1–15. Felsenstein, J., 2004. Inferring Phylogenies. ...
http://www.bio.puc.cl/caseb/pdf/prog1/JTB _ Liolaemus.pdf
- Model
Selection and Model Averaging in Phylogenetics
by J Nylander - 2005 - Related articles
http://sc.fsu.edu/~beerli/BSC-5936/11-28-05/Lecture_23_24.pdf
- MODEL
SELECTION IN PHYLOGENETICS
16 Nov 2005 ... Felsenstein J. 2004. Inferring Phylogenies. Sunderland, MA: Sinauer. 664 pp. Fisher RA. 1958. Statistical Methods for Re- search Workers. ...
http://www.webpages.uidaho.edu/~jacks/Sullivan&Joyce2005.pdf
- A geometric
morphometric analysis of the shape of the first upper ...
Felsenstein, J. (2004). PHYLIP, a phylogeny inference pack- age, version 3.62. Department of Genetics, University of. Washington, Seattle, Washington. ...
http://www.iapg.cas.cz/uzfg/cz/C2/JZool06.pdf
- Additional
molecular support for the new chordate phylogeny
by F de ric Delsuc - 2008 - Cited by 15
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-
Phylogenetic relationships in the genus Passerina L
File Format: PDF/Adobe Acrobatby A Van Niekerk - 2008Felsenstein J. 1995. PHYLIP (Phylogeny Inference Package). University of Washington,. Seattle. Felsenstein, J. 2004. Inferring phylogenies. ...
http://ujdigispace.uj.ac.za:8080/dspace/bitstream/10210/249/7/Chapter6.pdf
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Chapter 1 Introduction
Felsenstein J (2004) Inferring phylogenies. Sinauer Associates Inc. Massachusetts. Finerty JP (1979) Cycles in Canadian Lynx. American Naturalist, 114 ...
http://upetd.up.ac.za/thesis/submitted/etd-11072006-185247/unrestricted/01chapter1.pdf
- Modeling
body size evolution in Felidae under alternative ...
by JAF Diniz-Filho - 2009 - Cited by 3
http://www.scielo.br/pdf/gmb/v32n1/gmb-32-1-aop19.pdf
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BioMed Central | Full text | TREEFINDER: a powerful graphical
...
Felsenstein J: Inferring Phylogenies Sunderland, MA: Sinauer Associates 2004. OpenURL. Swofford DL: PAUP*. Phylogenetic analysis using parsimony (* and ...
http://www.biomedcentral.com/content/pdf/1471-2148-4-18.pdf
- a4027
2933..2947
Nordvik V, 2004, ``Vacancy chain models: do they fit into the economist's toolbox?'' Housing,. Theory and Society 21 155 ^ 162. Persky J, Felsenstein D, ...
http://www.envplan.com/epa/fulltext/a40/a4027.pdf
-
Professor Jotun Hein Case for Support BBSRC Grant Application
...
Jensen, J. and J. Hein (2004) “A Gibbs Sampler for Multiple Statistical ... Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum ...
http://www.stats.ox.ac.uk/__data/assets/pdf_file/0010/4006/statistical_alignment.pdf
-
Encyclopedia of Marine Mammals, Second Edition
by IIP Reconstruction - Related articles
http://www.bio.sdsu.edu/faculty/BERTA_files/Berta_2009Systematics.pdf
-
IN PHYLOGENETIC INFERENCE
by JF Scheepens - 2006 - Related articles
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- SHORT
COMMUNICATION TYPING OF PSEUDOMONAS SYRINGAE pv. PISI ...
by G Cirvilleri - 2007 - Related articles
http://www.sipav.org/main/jpp/volumes/0307/030716.pdf
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Statistical measures of uncertainty for branches in phylogenetic
...
by B Wróbel - 2008 - Cited by 1
http://jag.igr.poznan.pl/2008-Volume-49/1/pdf/2008_Volume_49_1-49-67.pdf
- 00
karta.indd
by W ULRICH - 2005 - Cited by 4
http://www.pol.j.ecol.cbe-pan.pl/article/ar53_4_10.pdf
- 1 (de 3)
ANALISIS FILOGENETICO CON DATOS MOLECULARES Curso ...
Felsenstein, J. 2004. Parsimony methods. Pp. 1-10 en: Inferring phylogenies. Sinauer Associates, Inc.,. Sunderland, MA. 664 pp. Swofford, DL y Sullivan, ...
http://www.mexicanconifers.org/pdfs/Lecturas_2008-1.pdf
- Marginal
likelihood for distance matrices
by P McCullagh - 2008 - Cited by 3
http://www.stat.uchicago.edu/~pmcc/reports/distance.pdf
- Originally
published as: Chmielewicz, B., Benzler, J., Pauli,
G ...
by B Chmielewicz - 2005 - Cited by 18
http://edoc.rki.de/oa/articles/rexgkiWmMmtE/PDF/29SVgkUwWKrc.pdf
-
PROTISTOLOGY
Felsenstein, J., 2004. PHYLIP (Phylogeny Inference Package) version 3.65. Seattle, Washington, Distributed by the author, Department of Genetics, ...
http://repository.ksu.edu.sa/jspui/bitstream/123456789/5673/1/Phylogeny ofsomesystematicallyuncertainurostyloids.pdf
- Incorporating
experimental design and error into coalescent ...
11 Jun 2007 ... Felsenstein, J., 2004 Inferring Phylogenies. Sinauer Assoc., Sunderland,. MA. Fisher, R. A., 1930 The Genetical Theory of Natural Selection. ...
http://www.genetics.org/cgi/rapidpdf/genetics.106.063560v1.pdf
- References
for: De Laet, J. 2005. Parsimony and the problem
of ...
Felsenstein, J. 1981a. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Biol. 17: 368376. Felsenstein, J. 2004. ...
http://www.anagallis.be/papers/De_Laet.2005a.refs.pdf
-
between and within species Using the quantitative genetic ...
16 Jun 2009 ... Felsenstein, J. 2004 Inferring phylogenies. Sunderland, MA: Sinauer Associates. Geman, S. & Geman, D. 1984 Stochastic relaxation, Gibbs ...
http://rstb.royalsocietypublishing.org/content/360/1459/1427.full.pdf
-
the base of the radiation of Holometabolous insects Phylogenomic
...
Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington, Seattle, ...
http://genome.cshlp.org/content/early/2006/10/25/gr.5204306.full.pdf
- Commentary
J. Biosci. | Vol. 29 | No. 2 | June 2004. Commentary .... Felsenstein J 1985 Phylogenies from gene frequencies: A statistical problem; Syst. Zool. ...
http://www.ias.ac.in/jbiosci/june2004/135.pdf
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Estimating Species Phylogenies Using Coalescence Times among
Sequences
by L Liu - 2009 - Cited by 7
http://www.oeb.harvard.edu/faculty/edwards/research/publications_files/STAR_STEAC_09.pdf
- Conflict and
resolution between phylogenies inferred from ...
by TJ Near - 2009 - Cited by 1
http://www.yale.edu/eeb/near/50_Near2009.pdf
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